Basic Information
VIS ID
TVIS30014297
Fusion event
HIV-OXNAD1 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
16350689/16309182 (Hg38)
End
16350689/16309182 (Hg38)
Orient
+
Location type
Intronic
Target gene
OXNAD1
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-155-5p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-12127/Upstream/435333; hsa-let-7g/Downstream/624014;
Nearest TSS
ENST00000440867/Upstream/43716; ENST00000607464/Downstream/5257;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/43703, chr3-CpG: 113/Downstream/203638
Nearby gene
OXNAD1(No orient, 3095)
Upstream sequence
GGTATATTAATCTTGTATACATATACAACTGTGGGTACCTATACAACTATGTCTCTCTTTCTTTTAATACACTTCAAATTCTTGCTatataccataatat
Downstream sequence
acttaaccatatctccatgatggacatttaaattgtttggagtttttggctattacaagcaatattgcagtaaacctgtttgtataatttttctgcacat
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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