Basic Information
VIS ID
TVIS30014298
Fusion event
HIV-SLC20A2 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
42367015/42509497 (Hg38)
End
42367015/42509497 (Hg38)
Orient
+
Location type
Intronic
Target gene
SLC20A2
miRNAs that regulate target gene
hsa-mir-877-3p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-124-1/Upstream/848989; hsa-mir-10400/Downstream/386700;
Nearest TSS
ENST00000518652/Upstream/6869; ENST00000529505/Downstream/25499;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/71956, chr8-CpG: 117/Downstream/31595
Upstream sequence
CTCCTTTCTCTTGGGGGCAATAATTCTGCACTTGCTGATACAAGATGCTAGGCTTAgccaggcacagtgtcatgcctataatcccagcactttgggaggc
Downstream sequence
caaggacatagcattgcttgaacccaggaatttgaaaccagtctgggcaacatagtgagatttcgtctctaaaaataaaaaaaaaattaaaaattaaaaa
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate