Basic Information
VIS ID
TVIS30014301
Fusion event
HIV-MIR1268A integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
131294177/128531898 (Hg38)
End
131294177/128531898 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
MIR1268A
Nearest miRNA
hsa-let-7a-1/Upstream/139184; hsa-mir-12126/Downstream/1337707;
Nearest TSS
ENST00000422679/Upstream/8250; ENST00000497216/Downstream/11788;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/26900, chr9-CpG: 126/Downstream/20051
Upstream sequence
tctagcctgggtgacagagtgagactccagctcaaaaaaaaaaaaaaaaaaaaaGATGGATGTCCATGAGTGGTTAGAATTAGAAGAAATCTTAAATAAG
Downstream sequence
GACATGATGTTGCTGTGGCATGGGGAGGCCACGTCAGTCTAGGGTTGGAAGCTAACTAACTTTCCTCCTACCTAGAGAGGTATGGAGAGAGGCTAGATGC
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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