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TVIS30014302
Basic Information
VIS ID
TVIS30014302
Fusion event
HIV-USP32 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
58264979/60187618 (Hg38)
End
58264979/60187618 (Hg38)
Orient
+
Location type
Intronic
Target gene
USP32
miRNAs that regulate target gene
hsa-mir-18a-3p
;
hsa-mir-20a-5p
;
hsa-mir-106b-5p
;
hsa-mir-6833-3p
;
hsa-mir-4768-5p
;
hsa-mir-7156-5p
;
hsa-mir-4273
;
hsa-mir-4753-3p
;
hsa-mir-6873-3p
;
hsa-mir-2117
;
hsa-mir-124-5p
;
hsa-mir-4696
;
hsa-mir-130b-5p
;
hsa-mir-6817-3p
;
hsa-mir-7110-3p
;
hsa-mir-519c-3p
;
hsa-mir-519b-3p
;
hsa-mir-519a-3p
;
hsa-mir-4796-3p
;
hsa-mir-548ah-5p
;
hsa-mir-3609
;
hsa-mir-17-5p
;
hsa-mir-20b-5p
;
hsa-mir-106a-5p
;
hsa-mir-93-5p
;
hsa-mir-526b-3p
;
hsa-mir-519d-3p
;
hsa-mir-301b-3p
;
hsa-mir-4295
;
hsa-mir-3666
;
hsa-mir-130a-3p
;
hsa-mir-454-3p
;
hsa-mir-301a-3p
;
hsa-mir-130b-3p
Nearest miRNA
hsa-mir-10226/Upstream/144513; hsa-mir-1250/Downstream/2756597;
Nearest TSS
ENST00000595228/Upstream/1685;
ENST00000461535/Downstream/21195;
Nearest CpG islands
None/Target,
chr17-CpG: 26/Upstream/36618
,
chr17-CpG: 86/Downstream/204001
Upstream sequence
ATATACGGTAGTGTTTCCTTTCTCATAGCCAGTTAAATATTATCTCTATTATCTCTACCAGGAATACTTTATGGCCAACCACAAATTAGAGTAAGCTAGT
Downstream sequence
AAAGAATGTTGATTTTTATTGACTATATTTTCTGTGGAACACAGGCTACAGTGCTAGATGAAGACAGGAAAGAAGGCTGATAAAAAACATATTTGTGGAC
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Sample Information
×
Sample type
PBMC
Gender
Female
CpG Island Information
×
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