Basic Information
VIS ID
TVIS30014310
Fusion event
HIV-LINC00623 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
144335470/145210586 (Hg38)
End
144335470/145210586 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA1F
Target gene
LINC00623
Nearest miRNA
hsa-mir-101-1/Upstream/28115858; hsa-mir-1182/Downstream/640001;
Nearest TSS
ENST00000473358/Upstream/114586; ENST00000618589/Downstream/31538;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/41558, chr1-CpG: 123/Downstream/4247
Upstream sequence
ccgcaatgcataggagagaattcccatctccaagaggctcacagtcaaacagacataaataggtgattacaatatacactaacaacatagttttagaaac
Downstream sequence
aactagcagaattatatagacgaagatgccaggaaaggcttctcagagaatctggcttggcaaatatctcaacaaagagggctgagcagggatgagccga
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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