Basic Information
VIS ID
TVIS30014319
Fusion event
HIV-chr7 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
150316752/150619664 (Hg38)
End
150316752/150619664 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA7I
Nearest miRNA
hsa-mir-10399/Upstream/3241543; hsa-mir-153-2/Downstream/618757;
Nearest TSS
ENST00000635602/Upstream/52228; ENST00000487388/Downstream/12682;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/211222, chr7-CpG: 44/Downstream/100662
Nearby gene
GIMAP6(No orient, 5712)
Upstream sequence
aaatagagtcgtggcatctgttctaaaggtttagtcatgtatcaggcacaataatgtaaaactcattagttgggttcaaactatgttcttgacagttaaa
Downstream sequence
gttacctgttcagatggctcaagactttaattaatatttgtggaaagggcataaaatgttttctatttgtctgtttatttctaaaagtttcctctttttt
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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