Basic Information
VIS ID
TVIS30014325
Fusion event
HIV-LOC100288798 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
46855065/46461282 (Hg38)
End
46855065/46461282 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA12A
Target gene
LOC100288798
Nearest miRNA
hsa-mir-1244-3/Upstream/4137423; hsa-let-7i/Downstream/726530;
Nearest TSS
ENST00000382841/Upstream/72426; ENST00000607353/Downstream/76220;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/77209, chr12-CpG: 64/Downstream/369847
Upstream sequence
CTCACTGTATGGTGAGTGCTCCCTAAATGCAAGCTTGCAAATGAGTGGGAAGTAGAGCATCCCTCTTTCTCTGTGTTCTATAGGGATCCCAAATAGAGGT
Downstream sequence
GTGAACTACACGTGCTTATAAGAGATAGAATATCAAGTAGAATTTAGATTCCTGTATATGGGAGAACATTCCTCTTCTGCTGGACTCTGTTTCTGCTGCA
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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