Basic Information
VIS ID
TVIS30014326
Fusion event
HIV-chr1 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
207054912/206881567 (Hg38)
End
207054912/206881567 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/406703; hsa-mir-1182/Downstream/920285;
Nearest TSS
ENST00000473358/Upstream/15758; ENST00000480741/Downstream/15876;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/195261, chr1-CpG: 63/Downstream/27781
Nearby gene
IL20(No orient, 12344)
Upstream sequence
tgaggcagacagatcacctgaggtcaggagttcaagaccagcttggctaacgtggtgaaaccccatctccactttttagttgaatttttaatacaaaaat
Downstream sequence
tagccaggcatggtggcctatgcctgtaatcccagctacttgagaggctgaggcaggagaattgcttgaactcgggaggtggagattgcagtgagccaaa
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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