Basic Information
VIS ID
TVIS30014328
Fusion event
HIV-BCAP29 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
107234279/107593834 (Hg38)
End
107234279/107593834 (Hg38)
Orient
-
Location type
Intronic
Target gene
BCAP29
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-23a-3p
Nearest miRNA
hsa-mir-10525/Upstream/5122303; hsa-mir-10399/Downstream/7059511;
Nearest TSS
ENST00000635602/Upstream/9915; ENST00000490060/Downstream/188;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/13657, chr7-CpG: 110/Downstream/66926
Upstream sequence
TGCTATAGTAATTCAAAATTTGCTACTAGTGTCCATTTATAGAGCACCTACTTTGAGCATGAAAAGTTCCCGGGTACTGTAGACGGAATGACATAAAGGT
Downstream sequence
CGCCTCTGCCTAAAGTCCATTATTTAAAAGTTTGGTCAGTTTTTCTAAAACTGCTTTCCATTTTTAACAAGCTTATATTCGTAAAAGCCAAAAGTACTGT
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate