Basic Information
VIS ID
TVIS30014336
Fusion event
HIV-chr15 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
85211446/84668215 (Hg38)
End
85211446/84668215 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/1600800; hsa-mir-11181/Downstream/712381;
Nearest TSS
ENST00000557528/Upstream/9652; ENST00000558044/Downstream/3532;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/9728, chr15-CpG: 84/Downstream/47393
Nearby gene
SEC11A(No orient, 1322)
Upstream sequence
GTAATCTTTTTATTTTTGGCTAATGGAGTGATTCAAATATTATTAAATGATTTGATTACCTTTTCAGAGAAACTTAGTTGTTGCTTGCAACTACAGCATC
Downstream sequence
CAGGAAAGGAGGAAAAATAATACTTATATAAAACTGGTTGCGAATATATGCAAGGGAAAAAAGTATTAATGTTTTCTTCCCAATACATTTATAAGGAGAA
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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