Basic Information
VIS ID
TVIS30014340
Fusion event
HIV-CEP128 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
81372501/80906157 (Hg38)
End
81372501/80906157 (Hg38)
Orient
+
Location type
Intronic
Target gene
CEP128
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-375 ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-10a-5p ; hsa-mir-6755-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-4762-5p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa
Nearest miRNA
hsa-mir-1260a/Upstream/3639867; hsa-mir-1185-1/Downstream/13042069;
Nearest TSS
ENST00000550708/Upstream/1229; ENST00000557096/Downstream/33383;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1044169, chr14-CpG: 29/Downstream/35209
Upstream sequence
TGATTGTTCCAAGCTTTCTTTTAACTAATTTAAAGAATATAATGAATGAAGCGTTATTCTTCTTAAACAACTTCCAAATACAAATAGACCACAGATTTTC
Downstream sequence
AAAGCTATTTCTGAAATATCTGGGTTCCCCCCAAAAAAAGGTATCAGAAAATTTTAAACTAAGTTATGtttaaaatataaaaatagtaaatacaaatatt
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate