Basic Information
VIS ID
TVIS30014341
Fusion event
HIV-KIF3B integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
30892833/32305030 (Hg38)
End
30892833/32305030 (Hg38)
Orient
+
Location type
Intronic
Target gene
KIF3B
miRNAs that regulate target gene
hsa-mir-324-5p ; hsa-mir-222-3p ; hsa-mir-10a-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-181d-5p ; hsa-mir-646 ; hsa-mir-4424 ; hsa-mir-4682 ; hsa-mir-8077 ; hsa-mir-1292-5p ; hsa-mir-4471 ; hsa-mir-8059 ; hsa-mir-874-3p ; hsa-mir-146b-3p ; hsa-mir-6799-3p ; hsa-mir-3173-5p ; hsa-mir-7976 ; hsa-mir-4468 ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-410-3p ; hsa-mir-6750-3p ; hsa-mir-1226-5p ; hsa-mir-129-5p ; hsa-mir-1304-5p ; hsa-mir-1914-3p ; hsa-mir-3184-5p ; hsa-mir-423-5p ; hsa-mir-4294 ; hsa-mir-4716-3p ; hsa-mir-4723-5p ; hsa-mir-5194 ; hsa-mir-5698 ; hsa-mir-6734-5p ; hsa-mir-6738-5p ; hsa-mir-6794-5p ; hsa-mir-6834-5p ; hsa-mir-6870-5p ; hsa-mir-7111-5p ; hsa-mir-8055
Nearest miRNA
hsa-mir-103a-2/Upstream/67183; hsa-mir-1-1/Downstream/1744089;
Nearest TSS
ENST00000382410/Upstream/27366; ENST00000612444/Downstream/50023;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/27042, chr20-CpG: 104/Downstream/52814
Upstream sequence
aggagttagagaccagcctggccaacatggcaaaaccctgtctctactaaaaaaaaaaaatacagaaattagccgggcatggtggtgggtgcctgtagtc
Downstream sequence
ccagctacttaggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagccgagatcgcaccactgcactccagcctgggggaca
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate