Basic Information
VIS ID
TVIS30014368
Fusion event
HIV-chr14 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
104343971/103877634 (Hg38)
End
104343971/103877634 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105370689 ; LOC105370690
Nearest miRNA
hsa-mir-1185-1/Upstream/1337908; hsa-mir-12121/Downstream/239771;
Nearest TSS
ENST00000550708/Upstream/2579; ENST00000496087/Downstream/2477;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/28981, chr14-CpG: 46/Downstream/43609
Nearby gene
LINC00637(No orient, 19585)
Upstream sequence
CCTCCATGTGAAAGATGGGAATTCAGCTACATCACATTACCCTACAAACTTTATTGTTAATGTAAttatttttatttcttctactgcttttttggtaact
Downstream sequence
ttatttatttatttatttattatttattttcgagatgcaatttcgctcttattgcccaggctggagtgcagcggcacagtctcggctcactgcaacctct
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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