Basic Information
VIS ID
TVIS30014385
Fusion event
HIV-R3HDM2 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
57729654/57335871 (Hg38)
End
57729654/57335871 (Hg38)
Orient
+
Location type
Intronic
Target gene
R3HDM2
miRNAs that regulate target gene
hsa-mir-671-5p ; hsa-mir-125b-5p ; hsa-let-7c-5p ; hsa-mir-6895-5p ; hsa-mir-1972 ; hsa-mir-6079 ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6828-5p ; hsa-mir-4755-3p ; hsa-mir-4786-3p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-5693 ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-5582-5p ; hsa-mir-1299 ; hsa-mir-3202 ; hsa-mir-4493 ; hsa-mir-4533 ; hsa-mir-6128 ; hsa-mir-875-3p ; hsa-mir-518c-5p ; hsa-mir-383-3p ; hsa-mir-514a-5p ; hsa-mir-4753-5p
Nearest miRNA
hsa-mir-1228/Upstream/141295; hsa-let-7i/Downstream/176817;
Nearest TSS
ENST00000382841/Upstream/25408; ENST00000547552/Downstream/5611;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/91981, chr12-CpG: 99/Downstream/139421
Nearby gene
R3HDM2(No orient, 25408)
Upstream sequence
agattataggtgttagccaggcatggtggctcaccgttgcaaacccagcaatttgggaagctgaagcaggaggatggcttgagcctatgagttccatcat
Downstream sequence
ccataaggaacttaaatgtacaagagaaaaacaaacaaccccattaaaaagtgggaaaaggatatgaacagacacttctcaaaagaagacatacatgcag
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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