Basic Information
VIS ID
TVIS30014396
Fusion event
HIV-ZNRD1ASP integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
30017074/30049297 (Hg38)
End
30017074/30049297 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
ZNRD1ASP
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-3143/Upstream/2901609; hsa-mir-10398/Downstream/535035;
Nearest TSS
ENST00000381078/Upstream/71830; ENST00000471008/Downstream/9602;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/41705, chr6-CpG: 27/Downstream/11862
Upstream sequence
cctttacttcacactatatacaaaaataagctcaaaatggaagaaagatctaaatgttagtggtgaaattacaaaattcttggaggaaaacctaggtgat
Downstream sequence
aaatctttatgaactggccgggtgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggtggatcacaaggtcaggagtttgagacca
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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