Basic Information
VIS ID
TVIS30014397
Fusion event
HIV-chr5 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
171100280/171673276 (Hg38)
End
171100280/171673276 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA5G
Nearest miRNA
hsa-mir-10397/Upstream/286516; hsa-mir-10523/Downstream/988889;
Nearest TSS
ENST00000502646/Upstream/253620; ENST00000524175/Downstream/100376;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/42940, chr5-CpG: 97/Downstream/332724
Nearby gene
SMIM23(No orient, 112596)
Upstream sequence
AAATGTAGTTTCTGATGAAGCCCTTGGTGGGTGGCAGTGGGATTTCTTAATCCAGTCACTAATCAAAACTGCACACTGCAACATTTCCAGAGAAGTGGCT
Downstream sequence
AATAGAAAAATAGATTCTGTTAGTTGATTTCAGGTTTCTTTCTAAATTGTTAATGTTGGGTTTTGCACACTCTGAGATTGGGATTGACTAGAATGCTTTG
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate