Basic Information
VIS ID
TVIS30014401
Fusion event
HIV-LOC100133315 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.4
Reference genome
GRCh37/hg19
Start
71619423/71908377 (Hg38)
End
71619423/71908377 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA11H
Target gene
LOC100133315
Nearest miRNA
hsa-mir-10392/Upstream/434809; hsa-let-7a-2/Downstream/163851;
Nearest TSS
ENST00000527297/Upstream/29924; ENST00000526903/Downstream/8861;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/94570, chr11-CpG: 51/Downstream/171962
Upstream sequence
ctaatgaataagatcaatatcagttattaatatcaggcatcattaatcattaatataatcatgtattgttatctttagtataagtatttaatattaatta
Downstream sequence
ttattatcggtattgattttaaaaattatattatGGGTTATTAAAATTGATAATTATTAGCGCCAATTAATAATTGAGATTATTAATTGCAGTAAGTCGC
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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