Basic Information
VIS ID
TVIS30014403
Fusion event
HIV-chrX integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q24
Reference genome
GRCh37/hg19
Start
118668277/119534314 (Hg38)
End
118668277/119534314 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/1147843; hsa-mir-105-1/Downstream/112424;
Nearest TSS
ENST00000429181/Upstream/64052; ENST00000625379/Downstream/8453;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/51391, chrX-CpG: 83/Downstream/40016
Nearby gene
CXorf56(No orient, 3835)
Upstream sequence
ctgcaggacctatacacgaaaaaaataacaaaacactgatgaaagaaatcaaagatctaaacaaatggaaagtggaaagatacactttgctcatgggttg
Downstream sequence
gaagatgtaatattattaagatgtcaattctccccaacgtgatttttcgattttacacaatcccaatcaaaatcccagaaagaatactggagataccaac
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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