Basic Information
VIS ID
TVIS30014405
Fusion event
HIV-HERC2P2 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
23320566/22552528 (Hg38)
End
23320566/22552528 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
HERC2P2
Nearest miRNA
hsa-mir-1268a/Upstream/327199; hsa-mir-10393/Downstream/645299;
Nearest TSS
ENST00000557528/Upstream/93405; ENST00000560105/Downstream/220535;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/57435, chr15-CpG: 120/Downstream/111771
Upstream sequence
tctcgatggagatatgcttttgtaatttttaaatgcaacttttggttgctaatgaggcctcaggaaatcagatataacccttactagatgattcttttca
Downstream sequence
gctgtaatatacatATTAAAatatatatttaacataatacaacatataaacataatatataaattaaaaaataattatatatatatatataGagagagag
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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