Basic Information
VIS ID
TVIS30014412
Fusion event
HIV-UBE3C integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
End
156949548/157156854 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10399/Upstream/5723215; hsa-mir-153-2/Downstream/417482;
Nearest cancer related gene
UBE3C(OG, No orient, 0)
Upstream sequence
ATTGCTGTACTTCTCCTGTCCCCCTTAATAATACTCTCGGAGACAGTTCCTGATCAGTAGATAGATCTACCACATTCCTTTAAAGAGCTATATGATATTC
Downstream sequence
CATGTAGTGAATGCCCTATAATTTTCAGCAGCCAAAAAAATAAAGCTGACTCCAGTGAGTTATTAATGTGGTCCTTATTATATGTGAAGACAGCCTTATT
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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