Basic Information
VIS ID
TVIS30014418
Fusion event
HIV-FAM234A integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
305344/255345 (Hg38)
End
305344/255345 (Hg38)
Orient
-
Location type
Intronic
Target gene
FAM234A
miRNAs that regulate target gene
hsa-mir-24-3p ; hsa-mir-320b ; hsa-mir-320a ; hsa-mir-4728-5p ; hsa-mir-3175 ; hsa-mir-1268b ; hsa-mir-1268a ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-3202 ; hsa-mir-3663-3p ; hsa-mir-6125 ; hsa-mir-3179
Nearest miRNA
hsa-mir-6859-4/Upstream/238226; hsa-mir-11401/Downstream/279971;
Nearest TSS
ENST00000527434/Upstream/717; ENST00000468354/Downstream/5860;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/19949, chr16-CpG: 26/Downstream/13273
Upstream sequence
tcccaacgtgctgggattacaggtgtaagtcaccacacctggcccaattcagtgatttgtagtcagtttgtagagttatgtagctgtcagtacaattccg
Downstream sequence
ttttagaatatttccatcatccctaaaagaTTGCTCAAGAGGCTGGGCACagaccgcatctctacaaaaaatacaaaaatcagccaggcgtggtggcatg
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate