Basic Information
VIS ID
TVIS30014424
Fusion event
HIV-FAM193A integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
2730241/2728514 (Hg38)
End
2730241/2728514 (Hg38)
Orient
-
Location type
Intronic
Target gene
FAM193A
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-6090 ; hsa-mir-182-5p ; hsa-mir-6816-5p ; hsa-mir-3196 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-760 ; hsa-mir-6809-5p ; hsa-mir-31-5p ; hsa-mir-7155-5p ; hsa-mir-637 ; hsa-mir-8089 ; hsa-mir-4700-5p ; hsa-mir-4667-5p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-6741-3p ; hsa-mir-212-5p ; hsa-mir-129-2-3p ; hsa-mir-129-1-3p ; hsa-mir-29c-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-6856-3p
Nearest miRNA
hsa-mir-4800/Upstream/478358; hsa-mir-12113/Downstream/3194761;
Nearest TSS
ENST00000502981/Upstream/32240; ENST00000510193/Downstream/16349;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/190820, chr4-CpG: 28/Downstream/3416
Upstream sequence
GGCAGTTTCGTTTTTCTATTTTCCTGTCTCTTTAAATCTTCCACCTGGCATTTGTGCATAGACTGTCAGCTGAGAagctgagaccttagaaaatatggcc
Downstream sequence
tgacagatgtggcttgcaccctattcgcagctagcaagactttctttaagctgttcttgagaggggcctggggctgaaattttgttccctcttcagagac
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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