Basic Information
VIS ID
TVIS30014427
Fusion event
HIV-LOC107984449 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.32
Reference genome
GRCh37/hg19
Start
127568290/127083745 (Hg38)
End
127568290/127083745 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
LOC107984449
Nearest miRNA
hsa-let-7i/Upstream/2168086; hsa-mir-3612/Downstream/1210347;
Nearest TSS
ENST00000382841/Upstream/23344; ENST00000617117/Downstream/62244;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/355762, chr12-CpG: 78/Downstream/62221
Nearby gene
LINC02405(No orient, 23348)
Upstream sequence
aaacaagatagctttgcaatgctttaaacaaacgttatttcctttggtgctttaccagttaattaatgtagttgttctaaatgggagggttgatctACTG
Downstream sequence
TAAACTGACCCATCACCACAAAACTTATGTTTTCTGAGAACTGTAATTTTCTAAATCTCCACAAATAAAAATTCCCCTATTTGAATGCATCTCTGCATTA
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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