Basic Information
VIS ID
TVIS30014429
Fusion event
HIV-chr10 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
42380243/41859964 (Hg38)
End
42380243/41859964 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-1265/Upstream/6218712; hsa-mir-107/Downstream/1137599;
Nearest TSS
ENST00000439456/Upstream/3406783; ENST00000442306/Downstream/325375;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/2916858, chr10-CpG: 184/Downstream/251069
Upstream sequence
cattccattccattccactccactctggttgattccattccattccattctatacaattacattgcactcgaattgattccattctattccattccattc
Downstream sequence
cattccattccattccattccattgcactcgggttgattccattccattccattccattccattacattccactcggattgattccattccattacattc
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate