Basic Information
VIS ID
TVIS30014435
Fusion event
HIV-chr8 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
145077623/144003455 (Hg38)
End
145077623/144003455 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA8D
Nearest miRNA
hsa-mir-1204/Upstream/58176; hsa-mir-10400/Downstream/53866;
Nearest TSS
ENST00000518652/Upstream/11281; ENST00000447830/Downstream/8959;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/12237, chr8-CpG: 22/Downstream/43275
Nearby gene
SPATC1(No orient, 8959)
Upstream sequence
aaggttgcagtgagccaagattgagattgcgccactgcactccagcctgggtgacagagtgaaactctgtctcaaaaaaaaaaaaaaaaaaaaaggttat
Downstream sequence
gaaacaatgattttcagaaattatacaaacattttgtaaaactgtcctgtgatgcaacaggcagcacaggactgggacccggagacaggaacactatgat
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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