Basic Information
VIS ID
TVIS30014437
Fusion event
HIV-chr9 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
139296085/136401633 (Hg38)
End
139296085/136401633 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/1550826; hsa-mir-126/Downstream/117935;
Nearest TSS
ENST00000422679/Upstream/1465; ENST00000620412/Downstream/2475;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1272, chr9-CpG: 27/Downstream/5455
Nearby gene
ENTR1(No orient, 289)
Upstream sequence
GAGCAGGAGGCGCATAGGGCTACGCAGCAGGACCGCTCCACAGTGACTGCTGGAAAGCTCTGGCCTTCACCTGTAGCTAAGGCTAGGGGTCTAGCAATTC
Downstream sequence
AGACGCCTTGTTTGAAAAATTCAACCACATGATCCGAAAAGATGATCCAATGCTAGAATCCAGTCTGTCCAGCTCTGAAACGTGCAGCTGCGTGACTCAC
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate