Basic Information
VIS ID
TVIS30014442
Fusion event
HIV-chr18 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
18518594/20938633 (Hg38)
End
18518594/20938633 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-3156-2/Upstream/6108391; hsa-mir-1-2/Downstream/744885;
Nearest TSS
ENST00000575820/Upstream/5774166; ENST00000579454/Downstream/16237;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/5607458, chr18-CpG: 113/Downstream/172346
Upstream sequence
aaagaagtttctgagaatgcttctgtctagtttttatgggaagatatttcctttttcaccatgggcctcaaagtgcttcaaacgtccacttccagatact
Downstream sequence
acaaaaagagtgtttcaaacctgctctatgaaagagaatgttcaattctgtgacttgaaggcagacatcacaaagcagtttctgagaatgcttctgtcga
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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