Basic Information
VIS ID
TVIS30014444
Fusion event
HIV-chr11 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
62324496/62557024 (Hg38)
End
62324496/62557024 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/678746; hsa-let-7a-2/Downstream/9987;
Nearest TSS
ENST00000527297/Upstream/789; ENST00000532626/Downstream/15719;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/9442, chr11-CpG: 39/Downstream/16732
Nearby gene
EEF1G(No orient, 2577)
Upstream sequence
TTGGTCCCTCCTGCCTGAGGCTTCAGCCACAGGAGGTTACGGTAAGCAAACACCAGGAAGGTGGTGAAGGTCCCACAACCACAGAAGGAGGTGTGATTTG
Downstream sequence
AAACAGAATTTGGGAAGAGTCTGACAGCTTCAGTGAGGCCCCAGCAACAAGCTAAAAGGCACGCCCCAAGCCTGCATCTAGCACTTTCAGTTgcaatcat
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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