VISDB Viral Integration Site DataBase

VIS ID

TVIS30014445

Fusion event

HIV-SDF4 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.33

Reference genome

Start

End

1157859/1222218 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-484 ; hsa-mir-378a-5p ; hsa-mir-218-5p ; hsa-mir-4497 ; hsa-mir-6742-5p ; hsa-mir-92a-2-5p ; hsa-mir-7704 ; hsa-mir-615-5p ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-4763-3p ; hsa-mir-1908-5p ; hsa-mir-1207-5p ; hsa-mir-6077 ; hsa-mir-4767 ; hsa-mir-6820-5p ; hsa-mir-6134 ; hsa-mir-9500

Nearest miRNA

hsa-mir-12136/Upstream/53131; hsa-mir-101-1/Downstream/73892;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/3179, chr1-CpG: 29/Downstream/719

Upstream sequence

GCAGAGAACCCACCCCAGGATGCCGGGCAGCGACGGAGCAGGCGACTCTGCACGTTCTCCTCAAAGCCCCAAACCAGACCACGGGCATGACCGGGAAGGG

Downstream sequence

GCCTCTCCCTGGGACCTGACCGCTCTCTGGTGACCACCTGACGGCCACACAGATGTCTCCAGCAGACCCAGGCCTCAGGGCCAGGCCCTCAGGCACAGGC

Target sequence

CACACGGAGCCCCAGGGTGGCAGCAACGCCACGGTACCCGCTCAGCTGTGCCTCACAACTGGGCCAGCAGGGGCTTCTGCCTGGACGGCTCTCCCAGACCTGGCCCCGTGCAGGGTGGCCCGGCTCTCCCCTCACCTGGCCTTAGCCCGGGTGCCGGGCCCCACCCGGCCCCACCCTCTTCACGCAGAGGCACCAGCTTGGACCCGCCCAGGGCTGAGGCTGCCCTGCTGGCCAACGGCCACACCCCAGACCCAA