Basic Information
VIS ID
TVIS30014455
Fusion event
HIV-RERE integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.23
Reference genome
End
8780427/8720470 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/2290574; hsa-mir-101-1/Downstream/146032;
Nearby gene
ENO1(No orient, 140529)
Nearest cancer related gene
RERE(OG, No orient, 0)
Upstream sequence
caataaccaacagatttttttgtattctataaatttcacacaatattcaaaggcagtaagtgctaagaaaaaaaagtagagcaagaaggatTAAACATAT
Downstream sequence
GCAGAGGGTAGGTACCAGCTGgagagagaagagagacagacagacagagtcagagagagagcaagagagagagagagaacaagaacgagcaagagagagc
Target sequence
aacaataaccaacagatttttttgtattctataaatttcacacaatattcaaaggcagtaagtgctaagaaaaaaaagtagagcaagaaggatTAAACATAT
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate