VISDB Viral Integration Site DataBase

VIS ID

TVIS30014457

Fusion event

HIV-UBE4B integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.22

Reference genome

Start

End

10140682/10080429 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-423-3p ; hsa-mir-92a-3p ; hsa-mir-6885-3p ; hsa-mir-3926 ; hsa-mir-1251-3p ; hsa-mir-4753-5p ; hsa-mir-9-5p ; hsa-mir-7111-5p ; hsa-mir-5698 ; hsa-mir-6870-5p ; hsa-mir-4723-5p ; hsa-mir-3175 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-4668-5p ; hsa-mir-3202 ; hsa-mir-3148 ; hsa-mir-3179 ; hsa-mir-873-5p ; hsa-mir-1182 ; hsa-mir-1178-5p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-6783-5p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-2681-5p ; hsa-mir-607 ; hsa-mir-29b-2-5p ; hsa-mir-580-3p ; hsa-mir-3671 ; hsa-mir-584-5p ; hsa-mir-6798-3p ; hsa-mir-186-3p ; hsa-mir-4762-5p ; hsa-mir-758-5p ; hsa-mir-218-2-3p ; hsa-mir-501-5p ; hsa-mir-500a-5p ; hsa-mir-651-3p

Nearest miRNA

hsa-mir-12136/Upstream/112971; hsa-mir-101-1/Downstream/1948729;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/47083, chr1-CpG: 156/Downstream/129528

Nearest cancer related gene

UBE4B(TSG, No orient, 0)

Upstream sequence

gaatcgcttgaacccaggaggcagaggttgcagtgagccaagatcccaccactgcactccagtgtggtgagagtgagaatccatctcaaaaaaaaaaaaa

Downstream sequence

ttattccaaatagccaagatatggaagcaacctaaataatccatcttcagatgaatgggaaaagaaactgtggtatgtatccacaatggaatattattca

Target sequence

gaaagaaagaaagaaaGAAAATTCTAtgttggtgagagtgtaaatttatatagccattttacaaaacaatatggaggtccctcagaaaactaaaaacagagctaccatatgatctggcagtcccactgagtatatatccaaagaaattaagattcatatgctgaagagatacctctactcatgttcattgcagca