VISDB Viral Integration Site DataBase

VIS ID

TVIS30014458

Fusion event

HIV-KIF1B integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.22

Reference genome

Start

End

10415420/10355658 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-9-5p ; hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-mir-16-5p ; hsa-mir-27b-3p ; hsa-let-7c-5p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-214-3p ; hsa-mir-511-5p ; hsa-mir-6755-3p ; hsa-mir-431-5p ; hsa-mir-567 ; hsa-mir-4635 ; hsa-mir-4781-3p ; hsa-mir-548l ; hsa-mir-548n ; hsa-mir-4762-3p ; hsa-mir-4303 ; hsa-mir-4795-3p ; hsa-mir-1827 ; hsa-mir-7162-3p ; hsa-mir-4649-3p ; hsa-mir-126-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-5096 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-4256 ; hsa-mir-197-3p ; hsa-mir-4755-3p ; hsa-mir-6131 ; hsa-mir-6821-3p ; hsa-mir-3663-5p ; hsa-mir-6790-3p ; hsa-mir-4750-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-4716-5p ; hsa-mir-29b-3p ; hsa-mir-4455 ; hsa-mir-548ac ; hsa-mir-548ae-3p ; hsa-mir-548ah-3p ; hsa-mir-548aj-3p ; hsa-mir-548am-3p ; hsa-mir-548aq-3p ; hsa-mir-548bb-3p ; hsa-mir-548d-3p ; hsa-mir-548h-3p ; hsa-mir-548j-3p ; hsa-mir-548x-3p ; hsa-mir-548z ; hsa-mir-574-5p ; hsa-mir-6867-5p

Nearest miRNA

hsa-mir-12136/Upstream/388200; hsa-mir-101-1/Downstream/1673500;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/29326, chr1-CpG: 147/Downstream/42833

Nearest cancer related gene

KIF1B(TSG, No orient, 0)

Upstream sequence

CTTAAATGATTTTTAGAGTTTCAAATTATTTTTTCATTCCATTTGCTAAACTTGTCAGTTTTATTCTTAGACTCTTTCAAGTTTTCCTCTTCTACATTAC

Downstream sequence

AAAGTAGAATGTTTCTCCCTTCATTTCATACAGAATCTCAGGTTTTGTTTTCTGTTTTCCTCTTTATCTGTCTTCTCTCCGTCAAAAGCATGAAGGGTTT

Target sequence

TTTGCAGGCTCTTTCTTGATAAGGATATTCCTAGGTATTGTCTGTTTGCTTTTTTGCACGTAGGATTCTAGTTTATCAGAATGCTTTCTGTCTTATGTTGCTTTGCCATTTTAATTTTGTAGTCCCCTCCCCATGTAAACCTACTGTACCTAGGATAGAGTAGACCCTGTTCTGTACCCTAAGAAGCGTATAGCTTCTTAAATGATTTTTAGAGTTTCAAATTATTTTTTCATTCCATTTGCTAAACTTGTCAGT