Fusion event
HIV-PRDM2 integration
Disease
HIV-infected disease (HID)
Reference genome
Not given
End
14083710/13757384 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-12136/Upstream/1178361; hsa-mir-101-1/Downstream/3101565;
Nearest cancer related gene
Upstream sequence
GTTTTTTAAATGACATATTTGTTGGTTTAAGTTTCTAATGAATATTTTCTTTCTCTTAGGTTTTATATTATTTTGGCATTAGTTTTGAAACCAAAAGAGC
Downstream sequence
ACAGTAAGACATTGCTTTTGCCTAACTCCCTCTGCAGTGCAGAGGATCGAGTTTAGGATTATAGAGCTCTTTCATTTTGTCTTATTGATGAGAAGCTTTA
Target sequence
AAACACCCCAAATAGTTTTTAAAAACACAGATTGCATTTTTACTGCTTTCTAGCTATTGTCTTTCAAGTGTTTTTTAAATGACATATTTGTTGGTTTAAGTTTCTAATGAATATTTTCTTTCTCTTAGGTTTTATATTATTTTGGCATTAGTTTTGAAACCAAAAGAGC
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.