Basic Information
VIS ID
TVIS30014462
Fusion event
HIV-PRDM2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.21
Reference genome
End
14083710/13757384 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/1178361; hsa-mir-101-1/Downstream/3101565;
Nearest cancer related gene
PRDM2(TSG, No orient, 0)
Upstream sequence
GTTTTTTAAATGACATATTTGTTGGTTTAAGTTTCTAATGAATATTTTCTTTCTCTTAGGTTTTATATTATTTTGGCATTAGTTTTGAAACCAAAAGAGC
Downstream sequence
ACAGTAAGACATTGCTTTTGCCTAACTCCCTCTGCAGTGCAGAGGATCGAGTTTAGGATTATAGAGCTCTTTCATTTTGTCTTATTGATGAGAAGCTTTA
Target sequence
AAACACCCCAAATAGTTTTTAAAAACACAGATTGCATTTTTACTGCTTTCTAGCTATTGTCTTTCAAGTGTTTTTTAAATGACATATTTGTTGGTTTAAGTTTCTAATGAATATTTTCTTTCTCTTAGGTTTTATATTATTTTGGCATTAGTTTTGAAACCAAAAGAGC
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate