VISDB Viral Integration Site DataBase

VIS ID

TVIS30014466

Fusion event

HIV-SPATA21 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.13

Reference genome

Start

End

16763586/16437469 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-498 ; hsa-mir-124-5p ; hsa-mir-4772-3p ; hsa-mir-1306-5p ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-6787-3p ; hsa-mir-6736-3p

Nearest miRNA

hsa-mir-12136/Upstream/3858446; hsa-mir-101-1/Downstream/421480;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/69694, chr1-CpG: 70/Downstream/3034

Nearby gene

SPATA21(No orient, 45)

Upstream sequence

tgtgacctccaactactggacagtgtcatttcccccagcttgtcactggttcagtggcccccattacacaatgaagataacaatcgttgccttgccaacc

Downstream sequence

tcacagtgattattgGGCCAGGGTACTctctcccagaaagccttccctgactctccccagactgtgtggggtttcttctctttgctcccacaggcccctg

Target sequence

TGTTCACCTTACACCCCACCTTGGCCCTGCACCTACCAGAAATCAGCTGGATGAGTCACAGTGAGATTTTCCACCCCTGCTCACCGCCTTGCACATAGGATGGGCTCTGTCTGAGCCTATACTTTGCCTGTTGGCTTGAATTGGATTTGTTTGGTATACAGGGCAGTTAAACTGGGAATAGATGGCAGGTCCAATTATTCTCAGCAGCAGAGGTTTAGGAATGCATTTCAGGAATATCCAGCCATGTGGTTAGGG