Basic Information
VIS ID
TVIS30014469
Fusion event
HIV-EIF4G3 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.12
Reference genome
GRCh37/hg19
Start
21135724/20809231 (Hg38)
End
21135694/20809231 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
EIF4G3
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-24-3p ; hsa-mir-16-5p ; hsa-mir-221-3p ; hsa-mir-17-5p ; hsa-mir-3613-3p ; hsa-mir-543 ; hsa-mir-136-5p ; hsa-mir-377-5p ; hsa-mir-218-5p ; hsa-mir-548c-3p ; hsa-mir-4724-3p ; hsa-mir-6813-3p ; hsa-mir-3200-3p
Nearest miRNA
hsa-mir-12136/Upstream/175443; hsa-mir-101-1/Downstream/179083;
Nearest TSS
ENST00000473358/Upstream/21908; ENST00000416959/Downstream/38714;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/21603, chr1-CpG: 77/Downstream/367391
Upstream sequence
cccagctaattttgtagttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcgggtgatctgcatgcctcggcctTT
Downstream sequence
TTTTAAAAAGACTTATCTTTGTAATTATATTAGTTAAGCTAATATTATCAAATTATCTGATTCATGGTAGATTGTCTCTTCAGTTACACTATAAGGATAA
Target sequence
acctcgggtgatctgcatgcctcggcctTT
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate