VISDB Viral Integration Site DataBase

VIS ID

TVIS30014470

Fusion event

HIV-EIF4G3 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.12

Reference genome

Start

End

21196804/20870111 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-24-3p ; hsa-mir-16-5p ; hsa-mir-221-3p ; hsa-mir-17-5p ; hsa-mir-3613-3p ; hsa-mir-543 ; hsa-mir-136-5p ; hsa-mir-377-5p ; hsa-mir-218-5p ; hsa-mir-548c-3p ; hsa-mir-4724-3p ; hsa-mir-6813-3p ; hsa-mir-3200-3p

Nearest miRNA

hsa-mir-12136/Upstream/236323; hsa-mir-101-1/Downstream/118203;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/82483, chr1-CpG: 77/Downstream/306511

Upstream sequence

GGATATGCACAAGATTCAAAAGGGAGTGGTCAGTTATGAAAGTATAAGTCATCTCTGATCATTTTTTCTTCAACACATTATAAAATCTTCCATCAGGACA

Downstream sequence

GTATCTGGCATAACAGTATACAGAATGCTTAAAAATCTGCCTTTAGTGCCATTCTTTGTAGCTGAGGTATGTATGTCTCCCACAGCACAGACAAAAAGTA

Target sequence

GTTACAAATCCCTCCTCCTCCAGTTGACCGGTCACTCGCTGTTGCCCAAGGCTGACTTGTCATGTCTGCAATTCCGGGCTTTATTTTTTATGGGATTTAACTGCCTCTCTTTTTCTCTCGGTGTCTCTTCCTATTCTCAGTCCTGTCATTCTCCTCATGCTTTGCTTTTAAACACTTAAAGTGGCAATACTACAAGCTCT