VISDB Viral Integration Site DataBase

VIS ID

TVIS30014477

Fusion event

HIV-ELOA integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.11

Reference genome

Start

End

24083404/23756637 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-320b ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-let-7f-5p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-125b-2-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-607 ; hsa-mir-1252-3p ; hsa-mir-3671 ; hsa-mir-4786-5p ; hsa-mir-587 ; hsa-mir-585-5p ; hsa-mir-4677-3p ; hsa-mir-769-5p ; hsa-mir-4793-5p ; hsa-mir-5196-3p ; hsa-mir-4760-3p ; hsa-mir-3646

Nearest miRNA

hsa-mir-12136/Upstream/712265; hsa-mir-101-1/Downstream/172433;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/12512, chr1-CpG: 81/Downstream/21375

Nearest cancer related gene

ELOA(TSG, No orient, 0)

Upstream sequence

cctcagcctccgcttcttggactgcagtgcaaggtgataattacccctgccctagggtagtcaagattaaatgGAGAGCAAAGCCTGGCTTATGGGAAAC

Downstream sequence

TTGTGCTCATGCCTAACCAGTGTTGTCCTGTGTTGCAGGATCAAGCCAGCCCCGTACCCCATGGGAAGCAGCCATGCTTCCGCCAGTAGCATCAGCTTTA

Target sequence

ATTCCCTTATGCTTTCCCTTTTCCCATCTAAACAAAAAACACATTTCTGCAATGATTGTTATTTTGTCTAAGCCACATTAGCCTTTTCAAAATACAGATTTATACCAAAACAGTGAAAAGTTAGTTGAGATTATCATTTTTTCTGAAAGGATAATGGAGACATCTCTGAGCCACCACCAGAATCCAGGGTGATAGGGTCCATTGGTCAAAGCCACAAACAGGGTGAGTCATCCTCACACAGGCCAGCTTCAGGCT