VISDB Viral Integration Site DataBase

VIS ID

TVIS30014495

Fusion event

HIV-RNF19B integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p35.1

Reference genome

Start

End

33415217/32949568 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-6780a-3p ; hsa-mir-146a-3p ; hsa-mir-3923 ; hsa-mir-1303 ; hsa-mir-5096 ; hsa-mir-6802-3p ; hsa-mir-411-5p ; hsa-mir-4662a-5p ; hsa-mir-3152-3p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-483-5p ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-6836-3p ; hsa-mir-1251-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-2276-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-216a-5p ; hsa-mir-516a-5p ; hsa-mir-4279 ; hsa-mir-4444 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-122-3p ; hsa-mir-5698 ; hsa-mir-4430 ; hsa-mir-143-5p ; hsa-mir-3652 ; hsa-mir-6722-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-5693 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-640 ; hsa-mir-3663-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-5089-5p ; hsa-mir-6878-3p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-657 ; hsa-mir-3665 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-212-5p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-5001-3p ; hsa-mir-2355-5p ; hsa-mir-4772-3p ; hsa-mir-6752-3p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a

Nearest miRNA

hsa-mir-12136/Upstream/862561; hsa-mir-101-1/Downstream/382825;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/47847, chr1-CpG: 101/Downstream/14362

Upstream sequence

TTGGAGTACTTGGGTTATACAATAAGATAATTTCTTTCAGCTATGGGCTCACATCATGAAATACCAAATAAAGAGACAATGAGATAATGCCAACTTATAC

Downstream sequence

GAACTCGTAAAGTCTGGGCCCTCTGTTGACGGGCCATATCGCATGTCTGATTTGGATGCCATATCTGCTTGCAGTGGTAGCAGAACTCAGTCTGGCAACC

Target sequence

CTGGTCCAGATTCTTGCCCATAACTGAGACCTGAAGTGTGTTTGGTCC