VISDB Viral Integration Site DataBase

VIS ID

TVIS30014497

Fusion event

HIV-KIAA0319L integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p34.3

Reference genome

Start

End

35949123/35483699 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-128-3p ; hsa-mir-423-3p ; hsa-mir-432-5p ; hsa-mir-218-5p ; hsa-mir-5689 ; hsa-mir-571 ; hsa-mir-219a-1-3p ; hsa-mir-129-5p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-431-5p ; hsa-mir-4294 ; hsa-mir-3194-3p ; hsa-mir-924

Nearest miRNA

hsa-mir-12136/Upstream/814005; hsa-mir-101-1/Downstream/1677864;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/214445, chr1-CpG: 95/Downstream/73380

Upstream sequence

taccactgccttgattactgtggctatacagtaagtcttctagctagatagtttaagtcctccaactctattgttctttttcaaaatcattttgatcatt

Downstream sequence

ctagatccCAATCTGTATAACATGGTtatatttgtttcctagagctgccataatgaattactataaactttgtggcttaaaacaatagaaattcattctc

Target sequence

tcaatggaccatataggtgtgggtctatttctggactctatattatgttccattaacttaatctagttttataccaataccactgccttgattactgtggctatacagtaagtcttctagctagatagtttaagtcctccaactctattgttctttttcaaaatcattttgatcatt