Basic Information
VIS ID
TVIS30014508
Fusion event
HIV-chr1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
37953704/37488103 (Hg38)
End
37953678/37488103 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/7814; hsa-mir-101-1/Downstream/12832;
Nearest TSS
ENST00000473358/Upstream/6413; ENST00000490312/Downstream/25417;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/13483, chr1-CpG: 71/Downstream/26208
Nearby gene
ZC3H12A(No orient, 3726)
Upstream sequence
ctcccgagtagctggcactacaggcatgtgccactatgcctgggtaattttttggtatttttgtagagatggggtttcaccaagttactcaggctggtct
Downstream sequence
tgaactcctgggttcaaagcaaatccaaccaccacagcctcccaaggtgctgggattttatagtcatgagccaacacacccagcTATttttttatgtttg
Target sequence
tttcaccaagttactcaggctggtct
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
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