Basic Information
VIS ID
TVIS30014510
Fusion event
HIV-MACF1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
End
39748288/39282517 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/1193188; hsa-mir-101-1/Downstream/1471838;
Upstream sequence
ATCTCTTGTTTGTAATTAGTTATAATACTGTTTCCATCTCCTCAATCAAAAATCAAAGCTTTGATTCATTTGTTCATTTGAAAAAGAAACATTTATTTAA
Downstream sequence
tgtatgccatcaagcagtggtaaatgcaatggcaggattagaaagtggcagaggtttgtggtactttggacagggtggtcagagatggcctttttggtga
Target sequence
CTacttttctaggaactgggtacaagtagcagtgaagaaaacagcgaaagttcttgctctcatggaacttatctttcagtagggagaataggtaataaa
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate