VISDB Viral Integration Site DataBase

VIS ID

TVIS30014516

Fusion event

HIV-FOXJ3 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p34.2

Reference genome

Start

End

42724737/42258842 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-122-5p ; hsa-mir-130b-3p ; hsa-mir-196a-5p ; hsa-mir-93-5p ; hsa-mir-197-3p ; hsa-mir-20a-5p ; hsa-let-7a-5p ; hsa-mir-494-3p ; hsa-mir-3908 ; hsa-mir-17-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-4796-3p ; hsa-mir-3675-3p ; hsa-mir-4684-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-513a-5p ; hsa-mir-5089-3p ; hsa-mir-5589-3p ; hsa-mir-5585-3p ; hsa-mir-6800-5p ; hsa-mir-610 ; hsa-mir-3117-5p ; hsa-mir-95-5p ; hsa-mir-425-5p ; hsa-mir-1179 ; hsa-mir-4703-5p ; hsa-mir-3942-5p ; hsa-mir-376c-3p ; hsa-mir-3662 ; hsa-mir-708-5p ; hsa-mir-3139 ; hsa-mir-28-5p ; hsa-mir-377-3p ; hsa-mir-8064 ; hsa-mir-342-3p ; hsa-mir-4639-3p ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-498 ; hsa-mir-6802-3p ; hsa-mir-3157-5p ; hsa-mir-4691-3p ; hsa-mir-6771-3p ; hsa-mir-548c-3p ; hsa-mir-1285-3p ; hsa-mir-31-5p ; hsa-mir-3187-5p ; hsa-mir-371a-5p ; hsa-mir-371b-5p ; hsa-mir-372-5p ; hsa-mir-373-5p ; hsa-mir-4432 ; hsa-mir-4696 ; hsa-mir-508-5p ; hsa-mir-5189-5p ; hsa-mir-612 ; hsa-mir-616-5p ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6849-3p ; hsa-mir-6860 ; hsa-mir-766-3p ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-12136/Upstream/1501470; hsa-mir-101-1/Downstream/912810;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/112822, chr1-CpG: 102/Downstream/75752

Upstream sequence

ACATCCTATTAAGGGATTAACAGACATATCTTGCTTTTAAATCATAGTGCCAATCAATCCTTTTAGAAACTTTAAGTTAGAGATAAAGTTTTACTATATC

Downstream sequence

aatgaaacaaaactgctgatatgcacaacgacatggatagctctcaaatacattatactaaagcaaaaaagccagactcagaaggccatgtactatatga

Target sequence

ATAACGAATTCCCAAGAAACAGATGGCTCACCTACATAATCCACTCACAAGGCAGCTTAACTTGACTATTATGTTACTACTTGAGTGTTATAGCTCAATATCTGTCAAGTCTAAGCCGAAAAGAAAGTAACTTGATGGTCAAATGATCATACAACTAACAAAAACatgtctttcaaatagtgattaaactctgataaatccgtgtgatggaatatatgcaatga