VISDB Viral Integration Site DataBase

VIS ID

TVIS30014518

Fusion event

HIV-YBX1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p34.2

Reference genome

Start

End

43155425/42689967 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-137 ; hsa-mir-124-3p ; hsa-mir-16-5p ; hsa-mir-1307-3p ; hsa-mir-1292-5p ; hsa-mir-1296-5p ; hsa-mir-935 ; hsa-mir-744-5p ; hsa-mir-615-3p ; hsa-mir-605-5p ; hsa-mir-484 ; hsa-mir-106b-5p ; hsa-mir-149-5p ; hsa-mir-34a-5p ; hsa-mir-25-3p ; hsa-mir-20a-5p ; hsa-mir-4451 ; hsa-mir-6744-5p ; hsa-mir-6832-5p ; hsa-mir-4650-3p ; hsa-mir-8069 ; hsa-mir-6831-3p ; hsa-mir-1537-3p ; hsa-mir-3529-5p ; hsa-mir-379-5p ; hsa-mir-382-5p

Nearest miRNA

hsa-mir-12136/Upstream/1932595; hsa-mir-101-1/Downstream/481685;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/6622, chr1-CpG: 15/Downstream/48477

Nearest cancer related gene

YBX1(OG, No orient, 0)

Upstream sequence

AATTAGATTTTAATTTAGAAATCTGGCTAGTATTAGTGAATAGTAAATGCCCAATAAATACTAAAAAGATTTGAGTACCTACCTTAGTAATGTAAGTTAT

Downstream sequence

TAAGTGTTTAGTGTAGTTTTTctcattttgcaggtaaaaaagccaatgaggcagctttcctaggttacacagctgttaatagttgagtcaagactaaaaa

Target sequence

AGTTTTCCAGGGAAGTTAAATTTTTTTGCCTTTGTTTTCCCATTTTGAGTTGCATTTTGTCTATTTTTAAGACCCTTACCAATCTGGATAGGCCATAGTATAGGAGTGGTAGCAATTAGATTTTAATTTAGAAATCTGGCTAGTATTAGTGAATAGTAAATGCCCAATAAATACTAAAAAGATTTGAGTACCTACCTTAGTAATGTAAGTTAT