VISDB Viral Integration Site DataBase

VIS ID

TVIS30014519

Fusion event

HIV-PTPRF integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p34.2

Reference genome

Start

End

44034585/43569058 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-24-3p ; hsa-mir-1914-5p ; hsa-mir-1229-3p ; hsa-mir-744-5p ; hsa-mir-455-3p ; hsa-mir-15b-3p ; hsa-mir-221-3p ; hsa-mir-1260b ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-4662a-5p ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-3190-3p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-6870-5p ; hsa-mir-7111-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-3175 ; hsa-mir-6878-5p ; hsa-mir-4795-5p ; hsa-mir-1296-3p ; hsa-mir-575 ; hsa-mir-6858-3p ; hsa-mir-4676-5p ; hsa-mir-6516-5p ; hsa-mir-1273e ; hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-486-3p ; hsa-mir-6499-3p ; hsa-mir-2467-3p ; hsa-mir-298 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4537 ; hsa-mir-219b-3p ; hsa-mir-4532 ; hsa-mir-4257 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-302f ; hsa-mir-3714 ; hsa-mir-4484 ; hsa-mir-6768-3p ; hsa-mir-548an ; hsa-mir-4730 ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-6842-5p ; hsa-mir-7110-5p ; hsa-mir-6752-5p ; hsa-mir-25-5p ; hsa-mir-658 ; hsa-mir-4787-5p ; hsa-mir-493-5p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-let-7c-3p ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-2115-5p ; hsa-mir-4679 ; hsa-mir-4677-3p ; hsa-mir-4684-5p ; hsa-mir-1268b ; hsa-mir-1268a ; hsa-mir-585-3p ; hsa-mir-4486 ; hsa-mir-939-3p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-7851-3p ; hsa-mir-619-3p ; hsa-mir-6771-3p ; hsa-mir-425-3p ; hsa-mir-3157-5p ; hsa-mir-7106-3p ; hsa-mir-4660 ; hsa-mir-4655-3p ; hsa-mir-4469 ; hsa-mir-6803-3p ; hsa-mir-4530 ; hsa-mir-6736-3p ; hsa-mir-4691-3p ; hsa-mir-646

Nearest miRNA

hsa-mir-12136/Upstream/120447; hsa-mir-101-1/Downstream/269564;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/2891, chr1-CpG: 44/Downstream/22026

Upstream sequence

AGGGAGAAAGCTCAAGGTCAAGGCTGCAGTAACGAATAGGTCAAGGTCAGGATCGGAGTTAGAAGGGGATCATTGGTAGGGCTGGGGGTGCCCCGGGTCA

Downstream sequence

GGGCTAGAGACCAGGCGGTGACCTGGGGCTCTGCCATGTGATAGAGCTGAAGGCTGGATGAAGGGAACACTGTGTGTGCGGACAGGGGAGAGGGGGCTGG

Target sequence

TGGTCTGCAGCCCTGACCGTGACTCCCAGGGTCAGGACTAAGTGAGGGAGAAAGCTCAAGGTCAAGGCTGCAGTAACGAATAGGTCAAGGTCAGGATCGGAGTTAGAAGGGGATCATTGGTAGGGCTGGGGGTGCCCCGGGTCA