VISDB Viral Integration Site DataBase

VIS ID

TVIS30014522

Fusion event

HIV-RNF11 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p32.3

Reference genome

Start

End

51707287/51241700 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-340-5p ; hsa-mir-24-3p ; hsa-mir-21-5p ; hsa-mir-19b-3p ; hsa-mir-484 ; hsa-mir-590-3p ; hsa-mir-2113 ; hsa-mir-1184 ; hsa-mir-4477b ; hsa-mir-4496 ; hsa-mir-7156-3p ; hsa-mir-7856-5p ; hsa-mir-199a-5p ; hsa-mir-129-5p ; hsa-mir-147a ; hsa-mir-199b-5p ; hsa-mir-1202 ; hsa-mir-3163 ; hsa-mir-3662 ; hsa-mir-3972 ; hsa-mir-5010-3p ; hsa-mir-6818-5p ; hsa-mir-6867-5p ; hsa-let-7a-3p ; hsa-let-7b-3p ; hsa-let-7f-1-3p ; hsa-mir-19a-3p ; hsa-mir-98-3p ; hsa-mir-4520-5p ; hsa-mir-4803 ; hsa-mir-548aw ; hsa-mir-208a-5p ; hsa-mir-208b-5p ; hsa-mir-548t-3p ; hsa-mir-548aa ; hsa-mir-548ap-3p ; hsa-mir-548as-3p ; hsa-mir-548at-3p ; hsa-mir-548ay-3p ; hsa-mir-487a-5p ; hsa-mir-487b-5p ; hsa-mir-584-5p ; hsa-mir-146a-5p ; hsa-mir-2110 ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-491-5p ; hsa-mir-92a-2-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-4725-3p ; hsa-mir-6780b-5p ; hsa-mir-4271 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-3202 ; hsa-mir-6077 ; hsa-mir-1253 ; hsa-mir-3179 ; hsa-mir-4729 ; hsa-mir-205-3p ; hsa-mir-6783-5p ; hsa-mir-548at-5p ; hsa-mir-1227-3p ; hsa-mir-891b ; hsa-mir-7114-3p ; hsa-mir-1180-5p ; hsa-mir-7853-5p ; hsa-mir-105-5p ; hsa-mir-6854-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-7849-3p ; hsa-mir-4666a-3p ; hsa-mir-17-3p ; hsa-mir-1205 ; hsa-mir-3158-5p ; hsa-mir-665 ; hsa-mir-7-5p ; hsa-mir-4772-3p ; hsa-mir-4802-3p ; hsa-mir-4671-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-130b-3p ; hsa-mir-3666 ; hsa-mir-454-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-4789-5p ; hsa-mir-758-5p ; hsa-mir-218-2-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-4999-5p ; hsa-mir-4742-3p ; hsa-mir-496 ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-4284 ; hsa-mir-657 ; hsa-mir-3665 ; hsa-mir-4522 ; hsa-mir-6845-3p ; hsa-mir-4638-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-6841-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-6513-3p ; hsa-mir-1307-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-1273g-3p ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-433-5p ; hsa-mir-4524a-3p ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4768-3p ; hsa-mir-4792 ; hsa-mir-497-3p ; hsa-mir-5186 ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-6715a-3p ; hsa-mir-6715b-3p ; hsa-mir-6807-5p ; hsa-mir-6840-3p

Nearest miRNA

hsa-mir-12136/Upstream/181597; hsa-mir-101-1/Downstream/594644;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/4830, chr1-CpG: 83/Downstream/88522

Upstream sequence

GAAAGTACTTGAATCCCTATTCTTGAAGTATTGGATGCAAAGAGATTTAGGGTGTTTGTCAAATTAGAAAGTAGAAACAAATTTGTCGCACCCTCTACCC

Downstream sequence

AACTCCCTTATTCCTAAATGTTTAAAAATAATACAGAGGAAATCTGCCCAGCGAAGGCAATCTTGGAAGGACAGTGAGTGGGAGGATAAGCCAGGAAAGG

Target sequence

CCTATTCTTGAAGTATTGGATGCAAAGAGATTTAGGGTGTTTGTCAAATTAGAAAGTAGAAACAAATTTGTCGCACCCTCTACCC