VISDB Viral Integration Site DataBase

VIS ID

TVIS30014537

Fusion event

HIV-SRSF11 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p31.1

Reference genome

Start

End

70696286/70230406 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-376a-5p ; hsa-mir-376a-3p ; hsa-mir-21-5p ; hsa-mir-423-5p ; hsa-mir-186-5p ; hsa-mir-126-5p ; hsa-mir-576-3p ; hsa-mir-944 ; hsa-mir-3190-3p ; hsa-mir-3668 ; hsa-mir-4491 ; hsa-mir-4657 ; hsa-mir-6505-5p ; hsa-mir-6833-5p ; hsa-mir-493-3p ; hsa-mir-3974 ; hsa-mir-4999-3p ; hsa-mir-5195-5p ; hsa-mir-6832-3p ; hsa-mir-4738-3p ; hsa-mir-376a-2-5p ; hsa-mir-3935 ; hsa-mir-548t-5p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-548az-5p ; hsa-mir-510-3p ; hsa-mir-127-5p ; hsa-mir-6806-3p ; hsa-mir-3928-5p ; hsa-mir-6807-3p ; hsa-mir-217 ; hsa-mir-509-5p ; hsa-mir-4418 ; hsa-mir-509-3-5p ; hsa-mir-100-3p ; hsa-mir-653-3p ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-556-3p ; hsa-mir-3682-5p ; hsa-mir-3171 ; hsa-mir-3662

Nearest miRNA

hsa-mir-101-1/Upstream/2046796; hsa-mir-11399/Downstream/837225;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/24647, chr1-CpG: 84/Downstream/123644

Upstream sequence

TTAATGTTACCTCCAGTAAATACAATTCCCTCCAGATTTAGCTATTACACTTCGGTGTTAGCTCTTGGTCAGTGTTTTAGAACAGTAGACATAGTCTACG

Downstream sequence

CATGAAAATTAACTGGTGAGGGGCCTCATTGCTATTTTTAAATTGTAGTTTTATTTTTAAATAGTCTTTTTTTAATCAGAGGATCAGATGCATGACTTTT

Target sequence

GTAAGGAATAGTCTTAATTGGTAAAACTAAGATAGCTGAATTTGGAAGGAACTCTTAATAGTAATGGATTTGGGGATTTTTTAGGTTCCTTGGTTAATGTTTGTTTCTTTTGTCTGTTTCTTTTTCTTTCATTTCTACACATTCATGCAGTATTTCATGGTTCTATCAAAGCAGCAGTAAAAAAAATACTCTTGACG