VISDB Viral Integration Site DataBase

VIS ID

TVIS30014556

Fusion event

HIV-CEPT1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p13.3

Reference genome

Start

End

111714748/111171942 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-23b-3p ; hsa-mir-183-5p ; hsa-mir-26a-5p ; hsa-mir-670-3p ; hsa-mir-580-3p ; hsa-mir-6770-5p ; hsa-mir-4797-3p ; hsa-mir-1253 ; hsa-mir-545-5p ; hsa-mir-100-3p ; hsa-mir-186-5p ; hsa-mir-3133

Nearest miRNA

hsa-mir-101-1/Upstream/1572975; hsa-mir-11399/Downstream/1289828;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/31261, chr1-CpG: 91/Downstream/31749

Upstream sequence

attctcccgcctcagcctcctgagtagttggaattacaggcatgcgccaccacacctgttaattttgtattgttagtagagacggggtttctccatgttg

Downstream sequence

CTCTACAACTTTAGGCTGTAGAAATCTAATGCGACACATAAGAAATTTGTTTTCCCATATGTTTTGTTAAAAAATCACTGGCATTTGGGTCCTCTTTGAC

Target sequence

gtcaggctggtctcaaactccctacctcaggtgatccgcctgcctcggcctccccaaagtgctgggattacaggcgtgagccaccacgcccagccAGGAGATTATTTTAAAGCAGCACCAGTCAAGATGTTCATGTACCTTCATAGATATAGAAAATTGTGGTTAGTATCATTTAATTTTCTCC