Basic Information
VIS ID
TVIS30014563
Fusion event
HIV-C1orf162 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
112008565/111465943 (Hg38)
End
112008806/111465943 (Hg38)
Orient
+
Location type
Intronic
Target gene
C1orf162
Nearest miRNA
hsa-mir-101-1/Upstream/1866976; hsa-mir-11399/Downstream/995827;
Nearest TSS
ENST00000473358/Upstream/16261; ENST00000369718/Downstream/7849;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/16363, chr1-CpG: 32/Downstream/49619
Upstream sequence
acagcctggaagctaagcatgatttttacattttaaatattatacataaaaattatacaaaattcaaatttcagtgttcataaataaagttttattagaa
Downstream sequence
ttattagattaatcttactgactgtattacacaaatttatatacttataacattttgtctgcttaatctaccaaatactgagaaatgtaaactaaatttc
Target sequence
catagctacctacactcattcatttacatattgtctgcggcttctttgttaccatgttggcagagctgagtactagcaacagagaccatatgctccacaaagcccaaaatatttactatctgcccttcacagaaaaagtttacctgcccctggcttccaacgtgttcaatttttaatgttttaggtgttcttgaaaaaaatctgtactctccagataacatatgcagggttttatatatgt
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate