Basic Information
VIS ID
TVIS30014564
Fusion event
HIV-C1orf162 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
112009417/111466795 (Hg38)
End
112009136/111466795 (Hg38)
Orient
-
Location type
Intronic
Target gene
C1orf162
Nearest miRNA
hsa-mir-101-1/Upstream/1867828; hsa-mir-11399/Downstream/994975;
Nearest TSS
ENST00000473358/Upstream/17113; ENST00000369718/Downstream/6997;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/17215, chr1-CpG: 32/Downstream/48767
Upstream sequence
attgctgttctattctgattcattcccactaatatattttatattttctgttttgtggcctattctggtttttgctattcattgttttggattgactaat
Downstream sequence
ttaattccaattgtttttttctctaatagtttgagttactctatttctgttataatgatcactctagaaattttaatattttaatctctcttctatgttt
Target sequence
tataccagctatcttgttaacattttcctggtgtaacttttcatccttctttcaacctttatggctgtttaagttctagatacatattttcaaacagtatatagcagattttttattcaatctggcaatctttgacttttaactaaagagtatagtccattttcatttattgtaattagcaattgctgttctattctgattcattcccactaatatattttatattttctgttttgtggcctattctggtttttg
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate