Basic Information
VIS ID
TVIS30014567
Fusion event
HIV-LOC105378920 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
116857023/116314401 (Hg38)
End
116857068/116314401 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105378920
Nearest miRNA
hsa-mir-101-1/Upstream/3432272; hsa-mir-1182/Downstream/245623;
Nearest TSS
ENST00000473358/Upstream/150117; ENST00000488733/Downstream/58267;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/145762, chr1-CpG: 155/Downstream/58268
Upstream sequence
ggatgctttccgcaccttggcacaaagactgtgcctcacctatcaagtgcttggcaagaggcaggtgcagaatacatgttagagaatgaaGGTAAAGTAA
Downstream sequence
tttttaatagagatggggtcttgctatattgcccaggctgttctcaaactcctgaccccaggtgatcccaaagtgctgggattacaagcacgacccgcag
Target sequence
GTATCTGATCTAAATATTCAGGGAGAAAAAAACTTATGATTATta
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate